Original Research
Original research
Koen JA Martens, Bartosz Turkowyd, Ulrike Endesfelder
Raw data to results: a hands-on introduction and overview of computational analysis for single-molecule localization microscopy
Front. Bioinform. 1:817254, 2022. 10.3389/fbinf.2021.817254
David Virant, Ilijana Vojnovic, Jannik Winkelmeier, Marc Endesfelder, Bartosz Turkowyd, David Lando, Ulrike Endesfelder
Unraveling the kinetochore nanostructure in Schizosaccharomyces pombe using multi-color single-molecule localization microscopy
bioRxiv, 2021. 10.1101/2021.12.01.469981
Johanna Rahm, Sebastian Malkusch, Ulrike Endesfelder, Marina Dietz, Mike Heilemann
Diffusion state transitions in single-particle trajectories of MET receptor tyrosine kinase measured in live cells
Frontiers in Computer Science, 104, 2021. 10.3389/fcomp.2021.757653
Felix Schneider, Thuy-An Duong, Isabell Metz, Jannik Winkelmeier, Christian A. Hübner, Ulrike Endesfelder, Marco B. Rust
Mutual functional dependence of cyclase-associated protein 1 (CAP1) and cofilin1 in neuronal actin dynamics and growth cone function
Prog Neurobiol 102050, 2021. 10.1016/j.pneurobio.2021.102050
Stephan Wimmi, Alexander Balinovic, Hannah Jeckel, Lisa Selinger, Dimitrios Lampaki, Emma Eisemann, Ina Meuskens, Dirk Linke, Knut Drescher, Ulrike Endesfelder, Andreas Diepold
Dynamic relocalization of cytosolic type III secretion system components prevents premature protein secretion at low external pH
Nature Communications 12, 1625, 2021. 10.1038/s41467-021-21863-4.
Highlighted in the general MPG newsroom.
Bartosz Turkowyd*, Sandra Schreiber*, Julia Wörtz, Ella Shtifman Segal, Moshe Mevarech, Iain G. Duggin, Anita Marchfelder#, Ulrike Endesfelder#
Establishing live-cell single-molecule localization microscopy imaging and single-particle tracking in the archaeon Haloferax volcanii
Frontiers in microbiology 11, 2020. 10.3389/fmicb.2020.583010.
∗Authors contributed equally. #Corresponding authors.
Sylvia Krippner*, Jannik Winkelmeier*, Julian Knerr*, Dominique T. Brandt, David Virant, Carsten Schwan#, Ulrike Endesfelder#, Robert Grosse#
Post-mitotic expansion of cell nuclei requires α-actinin 4 (ACTN4)-mediated nuclear actin filament bundling
EMBO reports 21 (11), 2020. 10.15252/embr.202050758
∗Authors contributed equally. #Corresponding authors.
Alexander Balinovic, David Albrecht, Ulrike Endesfelder
Spectrally red-shifted fluorescent fiducial markers for optimal drift correction in localization microscopy.
Journal of Physics D: Applied Physics 52 (20), 2019. 10.1088/1361-6463/ab0862.
Part of the special issue Next generation tools in localization microscopy.
Carolin Böger, Anne-Sophie Hafner, Thomas Schlichthärle, Maximilian T Strauss, Sebastian Malkusch, Ulrike Endesfelder, Ralf Jungmann, Erin M Schuman, Mike Heilemann
Super-resolution imaging and estimation of protein copy numbers at single synapses with DNA-point accumulation for imaging in nanoscale topography
Neurophotonics 6 (3), 035008, 2019. 10.1117/1.NPh.6.3.035008.
Bartosz Turkowyd*, Hanna Müller-Esparza*, Vanessa Climenti, Niklas Steube, Ulrike Endesfelder#, Lennart Randau#
Live-cell single-particle tracking photoactivated localization microscopy of Cascade-mediated DNA surveillance.
Methods in enzymology 616, 133-171, 2019. 10.1016/bs.mie.2018.11.001.
∗Authors contributed equally. #Corresponding authors.
Reviews & book chapters
Reviews & book chapters
Ilijana Vojnovic, Ulrike Endesfelder
Beginner’s guide to producing super-resolved images on a widefield fluorescence microscope
The Biochemist, 2020. 10.1042/BIO20200045.
Ulrike Endesfelder
Trendbericht Biochemie: Hochaufgelöste Zellbiologie
Nachrichten aus der Chemie 68 (7-8), 49-51; 2020. 10.1002/nadc.20204099591.
Kevin Kramm, Ulrike Endesfelder, Dina Grohmann
A single-molecule view of archaeal transcription
Journal of molecular biology 431 (20), 4116-4131, 2019. 10.1016/j.jmb.2019.06.009.
Ilijana Vojnovic, Jannik Winkelmeier, Ulrike Endesfelder
Visualizing the inner life of microbes: practices of multi-color single-molecule localization microscopy in microbiology
Biochemical Society Transactions 47 (4), 1041-1065, 2019. 10.1042/BST20180399.
Ulrike Endesfelder
From single bacterial cell imaging towards in vivo single-molecule biochemistry studies
Essays in biochemistry 63 (2), 187-196, 2019. 10.1042/EBC20190002.
Part of the special issue on Single Cell Biology.
Ulrike Endesfelder
Super‐Resolution Microscopy. A Practical Guide. Von Udo J. Birk.
Angewandte Chemie 130 (27), 8067-8067, 2018. 10.1002/ange.201804434.
Christoph Spahn, Ulrike Endesfelder, Mike Heilemann
Super-Resolution Fluorescence Microscopy of the Nanoscale Organization of RNAP and DNA in E. coli
Super-Resolution Imaging in Biomedicine 259, CRC Press, 2016. 10.4324/9781315372884.
Ulrike Endesfelder
Photoswitching Fluorophores in Super-Resolution Fluorescence Microscopy
Super-Resolution Imaging in Biomedicine 49, CRC Press, 2016. 10.4324/9781315372884.
Bartosz Turkowyd*, David Virant*, Ulrike Endesfelder
From single molecules to life: microscopy at the nanoscale
Analytical and Bioanalytical Chemistry 408 (25), 6885-6911, 2016. 10.1007/s00216-016-9781-8.
∗Authors contributed equally.
Theses
Theses
Doctoral theses
David Virant
Studying large multi-protein complexes using single-molecule localization microscopy
PhD, Marburg University, Biology, 2019.
Bartosz Turkowyd
Studies of single molecule dynamics in microorganisms
PhD, Marburg University, Biology, 2019.
Master theses
Samiha Ali Nahiyan
Quantifying the motion of diffusing fluorescent beads by Single Particle Tracking (SPT)
Bochum University, Elektrotechnik und Informationstechnik, 2021.
Haruko Gölz
Entwicklung photoaktivierbarer Varianten des fluoreszierenden Proteins mScarlet
Frankfurt University, Chemistry, 2018.
Jannik Winkelmeier
Cellular division of Schizosaccharomyces pombe studied by single molecule localization microscopy
Frankfurt University, Biophysics, 2018.
Alexander Balinovic
Characterizing the suitability of commonly used photoconvertible fluorescent proteins and new mutants for live-cell single molecule localization microscopy imaging strategies.
Frankfurt University, Chemistry, 2017.
Ilijana Vojnovic
Spatial and temporal organization of the kinetochore proteins sad1, cut12 and cnp1 in Schizosaccharomyces pombe studied by fluorescence single molecule methods at a nanometer resolution.
Frankfurt University, Chemistry, 2016.
Bachelor theses
Vanessa Climenti
Developing new tools for advanced sptPALM applications
Marburg University, Biology, 2019.
Michael Rigl
Creating new triple-color strains to investigate the kinetochore complex in Schizosaccharomyces pombe by single-molecule localization microscopy
Marburg University, Biology, 2019.
Marco Hui
Benchmarking sptPALM measurements of protein diffusion dynamics in Escherichia coli cells
Marburg University, Physics, 2018.
Kai Schmidt
Konstruktion und Charakterisierung von fluoreszenzmarkierten Kinetochorproteinen der Spalthefe Schizosaccharomyces pombe.
Frankfurt University, Chemistry, 2017.
Popular science
Popular science texts
Ulrike Endesfelder
Perspektiven wechseln - Die Welt aus Sicht der Mikroben
Article in Kalender Perspektiven wechseln 2020
Jan Thorbecke Verlag, 2020. ISBN: 978-3-7995-1370-8
Ulrike Endesfelder
Einblicke in das tiefste Innere von lebenden Zellen
Forschungsbericht 2018 - Max-Planck-Institut für terrestrische Mikrobiologie
Forschungsbericht 2018, 10.17617/1.6P.
English summary Insights into the inner life of living cells
Jonas Peters, Ulrike Endesfelder, Miriam Akkermann
Ich frag' ja nur - Grenzen unseres Wissens
Kalender 2019, Ich frag' ja nur - Grenzen unseres Wissens
Jan Thorbecke Verlag, 2018. ISBN: 978-3-7995-1270-1
Ulrike Endesfelder, Miriam Akkermann
Historische Kalender – Aktuelle Forschung
Kalender 2018, Historische Kalender – Aktuelle Forschung
Jan Thorbecke Verlag, 2017. ISBN: 978-3-7995-1191-9.
Ulrike Endesfelder
Wir können live beobachten, wie genetische Codes kopiert werden
Junge Akademie Magazin 23, 6-13, 2017.
english version We’re able to watch genetic codes copied right in front of our eyes
Ulrike Endesfelder
Von einzelnen Molekülen zur lebendigen Materie
Article in Kalender Neuland 2017
Thorbecke Verlag, 2016. ISBN: 978-3-7995-1078-3.
Ulrike Endesfelder
Hochaufgelöste Zellbiologie
BIOspektrum 22 (2), 217-217, 2016. 10.1007/s12268-016-0675-2.
Mike Heilemann, Christoph Spahn, Ulrike Endesfelder
Von schaltbaren Farbstoffen zu scharfen Bildern - Hochauflösende Fluoreszenzmikroskopie in Bakterien
GIT Labor-Fachzeitschrift 7/2015, 24-28, 2015.
Science policy
Science policy texts
Martin Dresler, Eva Buddeberg, Ulrike Endesfelder, Jan Haaker, Christian Hof, Robert Kretschmer, Dirk Pflüger, Fabian Schmidt
Why many funding schemes harm rather than support research
Nat Hum Behav, 2022. 10.1038/s41562-021-01286-3
Ulrike Endesfelder, Dirk Pflüger, Timo de Wolff
#StopPandemicBias: scientists, share your privilege
Nature 583, 683, 2020, 10.1038/d41586-020-02234-3.
Jule Specht, Christian Hof, Julia Tjus, Wolfram Pernice, Ulrike Endesfelder
Departments statt Lehrstühle: Moderne Personalstruktur für eine zukunftsfähige Wissenschaft
Die Junge Akademie, 2017, ISBN 978-3-00-057956-1.
English version Replacing professorial chairs with departments: a modern HR structure for a sustainable higher education system.
Ulrike Endesfelder
Beruf Wissenschaftlerin - Eine deutsch-japanische Konferenz über Gleichstellung und Chancen in der Wissenschaft.
Junge Akademie Magazin, 21, 46-48, 2016.
English version Female academics: A German-Japanese conference on equality and opportunity in academia.
Jule Specht, Ulrike Endesfelder, Tobias Erb, Christian Hof, Wolfram Pernice
Die Bundesprofessur: eine personenbezogene, langfristige Förderung im deutschen Wissenschaftssystem : Debattenbeitrag der AG Wissenschaftspolitik der Jungen Akademie
Die Junge Akademie, 2016, ISBN 978-3-00-053002-9.